Aeris Publications

• Corbin, J., Cerles, A., Tebon, P., Haverkate, M., Campbell, S., Hurst, J., Woodul, R., Hunzeker, J., Schwartz-Watjen, K., Owens, A., & Wu, A. (2025). A Flurry of Infectious Disease Modeling Tools During the COVID-19 Pandemic, Considerations for Future Selection. Pathogens, 14(9), 877. https://www.mdpi.com/2076-0817/14/9/877
• Al Shihabi A, Tebon PJ, Nguyen HTL, Chantharasamee J, Sartini S, Davarifar A, Jensen AY, Diaz-Infante M, Cox H, Gonzalez AE, Norris S, Sperry J, Nakashima J, Tavanaie N, Winata H, Fitz-Gibbon ST, Yamaguchi TN, Jeong JH, Dry S, Singh AS, Chmielowski B, Crompton JG, Kalbasi AK, Eilber FC, Hornicek F, Bernthal NM, Nelson SD, Boutros PC, Federman NC, Yanagawa J, Soragni A. The landscape of drug sensitivity and resistance in sarcoma. Cell Stem Cell. 2024 Oct 3;31(10):1524-1542.e4. doi: 10.1016/j.stem.2024.08.010. Epub 2024 Sep 20. PMID: 39305899.
• Tebon PJ, Wang B, Markowitz AL, Davarifar A, Tsai BL, Krawczuk P, Gonzalez AE, Sartini S, Murray GF, Nguyen HTL, Tavanaie N, Nguyen TL, Boutros PC, Teitell MA, Soragni A. Drug screening at single-organoid resolution via bioprinting and interferometry. Nat Commun. 2023 Jun 6;14(1):3168. doi: 10.1038/s41467-023-38832-8. PMID: 37280220; PMCID: PMC10244450.
• Nelson, M.A., P. Conry, K.R. Costigan, M.J. Brown, S. Meech, D Zajic, S.A. P.E. Bieringer, A.J. Annunzio, G. Bieberbach. 2022: A Case Study of the Weather Research and Forecasting Model Applied to the Joint Urban 2003 Tracer Field Experiment. Part 3: Boundary-Layer Parameterizations. Bound-Lay. Meteorol., 183:381–405
• Bieringer, P.E, A.J.  Piña, D.M. Lorenzetti, H.J.J. Jonker, M.D. Sohn, A. Annunzio, R.N. Fry, 2021: A Graphics Processing Unit (GPU) Approach to Large Eddy Simulation (LES) for Transport and Contaminant Dispersion. Atmosphere. 12. 890.
• Jiang X, Ren L, Tebon P, Wang C, Zhou X, Qu M, Zhu J, Ling H, Zhang S, Xue Y, Wu Q, Bandaru P, Lee J, Kim HJ, Ahadian S, Ashammakhi N, Dokmeci MR, Wu J, Gu Z, Sun W, Khademhosseini A. Cancer-on-a-Chip for Modeling Immune Checkpoint Inhibitor and Tumor Interactions. Small. 2021 Feb;17(7):e2004282. doi: 10.1002/smll.202004282. Epub 2021 Jan 27. PMID: 33502118; PMCID: PMC7939119.
• Zhou X, Qu M, Tebon P, Jiang X, Wang C, Xue Y, Zhu J, Zhang S, Oklu R, Sengupta S, Sun W, Khademhosseini A. Screening Cancer Immunotherapy: When Engineering Approaches Meet Artificial Intelligence. Adv Sci (Weinh). 2020 Aug 13;7(19):2001447. doi: 10.1002/advs.202001447. PMID: 33042756; PMCID: PMC7539186.
• Seger CD, Wang L, Dong X, Tebon P, Kwon S, Liew EC, Marijic J, Umar S, Hoftman NN. A Novel Negative Pressure Isolation Device for Aerosol Transmissible COVID-19. Anesth Analg. 2020 Sep;131(3):664-668. doi: 10.1213/ANE.0000000000005052. PMID: 32541251; PMCID: PMC7302060.
• Hoffman T, Antovski P, Tebon P, Xu C, Ashammakhi N, Ahadian S, Morsut L, Khademhosseini A. Syntheti Biology and Tissue Engineering: Toward Fabrication of Complex and Smart Cellular Constructs. Adv Funct Mater. 2020 Mar; 30:1909882. doi: 10.1002/adfm.201909882.
• Lee K, Goudie MJ, Tebon P, Sun W, Luo Z, Lee J, Zhang S, Fetah K, Kim HJ, Xue Y, Darabi MA, Ahadian S, Sarikhani E, Ryu W, Gu Z, Weiss PS, Dokmeci MR, Ashammakhi N, Khademhosseini A. Non-transdermal microneedles for advanced drug delivery. Adv Drug Deliv Rev. 2020;165-166:41-59. doi: 10.1016/j.addr.2019.11.010. Epub 2019 Dec 16. PMID: 31837356; PMCID: PMC7295684.
• Fetah K, Tebon P, Goudie MJ, Eichenbaum J, Ren L, Barros N, Nasiri R, Ahadian S, Ashammakhi N, Dokmeci MR, Khademhosseini A. The emergence of 3D bioprinting in organ-on-chip systems. Prog Biomed Eng. 2019 Jul; 1:012001. doi: 10.1088/2516-1091/ab23df.
• Finnegan, M., Corbin, J., 2018: Antibiotic resistance and breastfeeding: A neglected area of study. Journal of Global Antimicrobial Resistance. 12: 139-140.
• Bieringer, P.E., G.S. Young, L.M. Rodriguez, A.J. Annunzio, F. Vandenberghe, S.E. Haupt, 2017: Paradigms and Commonalities in Atmospheric Source Term Estimation., Atmos. Environ. 156, pp. 102-112. http://dx.doi.org/10.1016/j.atmosenv.2017.02.011.
• Bieringer, P.E., G. Young, A.J. Annunzio, L.M. Rodriguez, S.E. Haupt, 2017:  Paradigms and Commonalities in Atmospheric Source Term Estimation.  Atmospheric Environment 156:: 102-112.
• Meir, T., J. Pullen, A.F. Blumberg, T.R. Holt, P.E. Bieringer, and G. Bieberbach, Jr., 2017: Simulation of Airborne Transport and Dispersion for Urban Waterside Releases. J. Appl. Meteor. Climatol, 56, 27-44.
• Steinhoff, D.F., A.J. Monaghan, L. Eisen, M.J. Barlage, T.M. Hopson, I. Tarakidzwa, K. Ortiz-Rosario, S. Lozano-Fuentes, M.H. Hayden, P.E. Bieringer, C. Welsh-Rodgriguez, 2016: A Weather-Driven Energy Balance Model for Determining Water Height and Temperature in Container Habitats for Aedes aegypti. Earth Interact., 20, No 24, pp. 1-31.
• Kim, M., R. Ohba, M. Oura, S. Kato, M. Takigawa, P.E. Bieringer, B. Lauritzen, and M. Drews, 2016: A Source Term Estimation Method for a Nuclear Accident, using Atmospheric Dispersion Models., Int. J. Environ. Pollut, Vol. 58, Nos. 1/2, pp 39-51.
• Nelson, M.A., M.J. Brown, S.A. Halverson, P.E. Bieringer, A.J. Annunzio, G. Bieberbach, 2016: A Case Study of the Weather Research and Forecasting Model Applied to the Joint Urban 2003 Tracer Field Experiment. Part 2: Contaminant Dispersion. Bound-Lay. Meteorol., Available online July 2016.
• Nelson, M.A., M.J. Brown, S.A. Halverson, P.E. Bieringer, A.J. Annunzio, G. Bieberbach, 2016: Assimilation of WRF Meso-Scale Meteorological Simulations into the QUIC Atmospheric Dispersion Modeling System. Part 1: Wind and Turbulence. Bound-Lay. Meteorol,, 158, Issue 2, pp. 285-309.
• Nelson, M.A., M.J. Brown, S.A. Halverson, P.E. Bieringer, A.J. Annunzio, G. Bieberbach, 2015: Assimilation of WRF Meso-Scale Meteorological Simulations into the QUIC Atmospheric Dispersion Modeling System. Part 1: Wind and Turbulence. Accepted for publication, with revisions, in Boundary-Layer Meteorology.
• Bieringer, P.E., F. Vandenberghe, I. Sykes, J. Hannan, J. Hurst, G. Bieberbach, L.M. Rodriguez, and R. Fry, 2015: Automated Source Parameter and Low Level Wind Estimation for Atmospheric Transport and Dispersion Applications. Accepted for publication, with revisions, in Atmospheric Environment.
• Urban, J. T., K. Galvin, N. Platt, P.E. Bieringer, G. Bieberbach, A.J. Annunzio, 2014: Comparison of hazard area and casualty predictions of a small-scale chemical attack using various toxic load toxicity models. In Press: The International Journal of Environment and Pollution.
• Eisen, L. A. J. Monaghan, S. Lozano-Fuentes, D. F. Steinhoff, M. H. Hayden, and P. E. Bieringer, 2014: The Impact of Temperature on the Bionomics of the Vector Mosquito Aedes (Stegomyia) aegypti, With Special Reference to the Cool Geographic Range Margins. Journal of Medical Entomology., 51, No 3., pp 1-21.
• Bieringer, P. E., A. J. Annunzio, N. Platt, G. Bieberbach, J. Hannan, 2014: Contrasting the use of single- realization versus ensemble-average atmospheric dispersion solutions for chemical and biological defense analyses. J. Appl. Meteor. Climatol., 53, 1399–1415. doi: http://dx.doi.org/10.1175/JAMC-D-13- 0201.1
• Nunalee, C.G., B. Kosovic, P.E. Bieringer., 2014: Evaluation of WRF-LES for Dispersion and Transport Modeling Over Complex Terrain, Atmospheric Environment, 99, pp. 571-581.
• Bieringer, P.E., S. Longmore, G. Bieberbach, L.M. Rodriguez, J, Copeland, and J. Hannan, 2013: A Method for Targeting Air Samplers for Facility Monitoring in an Urban Environment. Atmospheric Environment, 80, pp. 1-12.
• Bieringer P.E., P.S. Ray, A.J. Annunzio, 2013. The Effect Of Topographic Variability On Initial Condition Sensitivity Of Low-Level Wind Forecasts Part II: Experiments Using Real Terrain And Observations. Mon Wea. Rev., 141, pp. 2156-2172.
• Bieringer P.E., P.S. Ray, A.J. Annunzio, 2013. The Effect Of Topographic Variability On Initial Condition Sensitivity Of Low-Level Wind Forecasts Part 1: Experiments Using Idealized Terrain. Mon Wea. Rev., 141, pp 2137-2155.
• Bieringer, P.E., S. Hanna, G. Young, B. Kosovic, J. Hannan, and R. Ohba, 2013: Methods for Estimating the Atmospheric Radiation Release from the Fukushima Dai-ichi Nuclear Power Plant. Bull. Amer. Meteor. Soc., 94.
• Rodriguez, L.M., P.E. Bieringer, T.Warner 2013: Urban transport and dispersion model sensitivity to wind direction uncertainty and source location,Atmospheric Environment, Volume 64, January 2013, Pages 25- 39, ISSN 1352-2310, 10.1016/j.atmosenv.2012.08.037.
• Platt, N., D. DeRiggi, S. Warner, P.E. Bieringer, G. Bieberbach, A. Wyszogrodzki, and J. Weil, 2012: Method for comparison of large eddy simulation generated wind fluctuations with short-range observations, Int. J. Environment and Pollution, Vol. 48, No. 1/2/3/4, pp.22–30.
• Xie, Y., S. Koch, J. McGinley, S. Albers, P.E. Bieringer, M. Wolfson, M. Chan, 2011: A space–time multiscale analysis system: a sequential variational analysis approach. Mon. Wea. Rev., 139, 1224–1240.
• Byers, J., Eichinger, D., 2007: Acetylation of the Entamoeba histone H4 N-terminal domain is influenced by short chain fatty acids that enter trophozoites in a pH-dependent manner. International Journal for Parasitology. 1:57-64.
• Warner, S., N. Platt, J.F. Heagy, J.E. Jordan, and G. Bieberbach, 2006: Comparisons of Transport and Dispersion Model Predictions of the Mock Urban Setting Test Field Experiment. J. Appl. Meteor. Climatol., 45, 1414–1428.
• Byers, J., Eichinger, D., 2005: Entameoba invadens: restriction of ploidy by colonic short-chain fatty acids. Experimental Parasitology 110: 203-206.
• Byers, J. Faigle, W., Eichinger, D., 2005: Colonic short-chain fatty acids inhibit encystation of Entamoeba invadens. Cellular Microbiology 7: 269-279.
• Ray P.S., P.E. Bieringer, X. Niu, and B. Whissel, 2003: An Improved Estimate of Tornado Occurrence in the United States. Mon Wea. Rev., 131, pp 1026-1031.
• Warner, S., N. Platt, J.F. Heagy, S. Bradley, G. Bieberbach, G. Sugiyama, J.S. Nasstrom, K.T. Foster, and D. Larson, 2001: User-oriented measures of effectiveness for the evaluation of transport and dispersion models, Institute for Defense Analysis, P-3554.
• Warner, S., J.F. Heagy, N. Platt, D. Larson, G. Sugiyama, J.S. Nasstrom, K.T. Foster, S. Bradley, and G. Bieberbach, 2001: Evaluation of transport and dispersion models: A controlled comparison of HPAC and NARAC predictions, Institute for Defense Analysis, P-3555.
• Hannan, J.R., H.E. Fuelberg, A.M. Thompson, G. Bieberbach Jr., R.D. Knabb, Y. Kondo, B.E. Anderson, E.V. Browell, G.L. Gregory, G.W. Sachse, and H.B. Singh, 2000: Atmospheric chemical transport based on high resolution model-derived winds: A case study, J. Geophys. Res., 105, No. 3, 3807-3820.
• Fuelberg, H.E., J.R. Hannan, P.F.J. van Velthoven, E.V. Browell, G. Bieberbach Jr., R.D. Knabb, G.L. Gregory, K.E. Pickering, and H.B. Selkirk, 2000: A meteorological overview of the Subsonic Assessment Ozone and Nitrogen Oxide Experiment (SONEX) period, J. Geophys. Res., 105, No. 3, 3633-3652.
• Bieberbach, G., H.E. Fuelberg, A.M. Thompson, A. Schmitt, J.R. Hannan, G.L. Gregory, Y. Kondo, R.D. Knabb, G.W. Sachse, and R.W. Talbot, 2000: Mesoscale numerical simulations of air traffic emissions over the North Atlantic during SONEX flight 10: A case study, J. Geophys. Res., 105, 3821-3832.
• Bieringer, P.E., and P.S. Ray, 1996: A comparison of Tornado Warning Lead Times with and without NEXRAD Doppler Radar. Weather and Forecasting, 11, pp 47-52.

Book Chapters

• Thurman, A., Corbin J., Shelburne, S., et al. (2019). CB-1 Chemical Biological Effected Manual Number 1, Chapter 10- Medical Diagnostics. DTRA/J9CBI.
• Rodriguez, J., Corbin, J., Shelburne, S., et. al. (2019). CB-1 Chemical Biological Effected Manual Number 1, Chapter 11- Medical Protection. DTRA/J9CBI.
• Pei, L., Bar-Yam, S., Byers-Corbin, J., Casagrande, R., Eichler, F., Lin, A., Österreicher, M., Regardh, P. C., Turlington, R. D., Oye, K. A., Torgersen, H., Guan, Z.-J., Wei, W. and Schmidt, M. (2012) Regulatory Frameworks for Synthetic Biology, in Synthetic Biology: Industrial and Environmental Applications (ed M. Schmidt), Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany.

• Reinholt, K., P.E. Bieringer, and C. Floerchinger (2023) Wildland Fire Uncrewed Aircraft Traffic Management (UTM) Flight Scheduling and Route Planning System – Final NASA Phase I SBIR Technical Report. Aeris Technical Report No. NASA-3., Aeris LLC, Louisville CO.
• Dingus, A. Tebon, P., Corbin, J. (2023). Antimicrobial Resistance in CBRN Events: Pandemics. Prepared for Administration for Strategic Preparedness and Response contract 75A50222F80021.
• Haverkate, M., Dettmann, R., Dingus, A., Tebon, P., Corbin, J. (2023) Antimicrobial Resistance in CBRN Events: Smallpox Outbreak. Prepared for Administration for Strategic Preparedness and Response contract 75A50222F80021.
• Tebon, P., Dingus, A., Dettmann, R., Nubbe, K., Corbin, J. (2023). Antimicrobial Resistance in CBRN Events: Nuclear Detonations. Prepared for Administration for Strategic Preparedness and Response contract 75A50222F80021.
• Adams, L., Nubbe, K., Dingus, A. Tebon, P., Corbin, J. (2023). Antimicrobial Resistance in CBRN Events: Vesicant (HD) Exposure.  Prepared for Administration for Strategic Preparedness and Response contract 75A50222F80021.
• Dettmann, R., Dingus, A., Tebon, P., Corbin, J. (2023) Antimicrobial Resistance in CBRN Events: Botulism. Prepared for Administration for Strategic Preparedness and Response contract 75A50222F80021.
• Adams, G., MacMillan, L., Campbell, S., Stump, E., Plaine, L., Adams, L., Hurst, J., Tebon, P., Corbin, J. (2023) Fentalog Public Health Response Model and Parameters: Fentanyl and Carfentanil. Prepared for Administration for Strategic Preparedness and Response contract 75A50222F80021.
• Wyneken H., Rodriguez J., Falkenberg, N., Corbin, J. (2023). Incorporating Dose Response Uncertainty in FXCODA. Prepared for the Defense Threat Reduction Agency contract HDTRA1-22-C-0007.
• Jackson, S., Tebon, P., Pinney, J., MacMillan, L., Falkenberg, N., Plaine, L., Stump, E., O’Meara, B., Turner, E., Chigges,
• J., Corbin, J. (2023). Market Research for Management of Bacterial Wound Infections Developed in the Combat Environment. Prepared for U.S. Army Medical Materiel Development Activity contract W81XWH-22-F-0331.
• Tebon, P., Corbin, J., Rodriguez, J. (2023) Medical Countermeasure Parameters: Botulinum Toxin. Prepared for Prepared for the Defense Threat Reduction Agency contract HDTRA1-22-C-0007.
• Campbell, S., Cerles, A., Piney, J., Rodriguez, J. Corbin, J. (2023) Medical Countermeasure Parameters: Variola virus (smallpox). Prepared for Prepared for the Defense Threat Reduction Agency contract HDTRA1-22-C-0007.
• Cerles, A. Campbell, S., Rodriguez, J., Corbin, J. (2023) Medical Countermeasure Parameters: Bacillus anthracis. Prepared for Prepared for the Defense Threat Reduction Agency contract HDTRA1-22-C-0007.
• Campbell, S., Cerles, A., Rodriguez, J. Corbin, J. (2023) Medical Countermeasure Parameters: Francisella tularensis. Prepared for Prepared for the Defense Threat Reduction Agency contract HDTRA1-22-C-0007.
• Corbin, J., Kondo, B., Stump, E., Dettmann, R., Pinney, J., Eberts, M., Hobbs, S., Casagrande, R. (2022). Feasibility Assessment of Misuse of Fungal Toxins. Prepared for Battelle Memorial Institute. Study Number B22-4-041
• Bieringer, P.E., A.J. Annunzio, K. Reinholt, C. Floerchinger, and S. Runyon, 2021: A Microscale Weather Based Unmanned Aircraft Systems Traffic Management Optimization System – Final NASA Phase I SBIR Technical Report. Aeris Technical Report No. NASA-2., Aeris LLC, Louisville CO.
• Corbin, J. Basham, C. Casagrande, R. (2021) Behavioral and Other Non-Disease (BOND) Effects Enabled by Advanced Biotechnology. Prepared for Battelle Memorial Institute contract US001-0000715079.
• Schmitt S, Rodriguez J, Corbin J. (2021) Modeling COVID-19 Disease Severity in Several Adult Subpopulations. Prepared for the Defense Threat Reduction Agency contract HDTRA1-119-C-0022.
• Schmitt S, Rodriguez J, Corbin J. (2021) Modeling COVID-19 Disease Severity Across the General Adult Population. Prepared for the Defense Threat Reduction Agency contract HDTRA1-119-C-0022.
• Corbin J, Cerles A. (2021) Data Gathering Study. Prepared for Battelle Memorial Institute contract US001-0000715079.
• Piña, A.J., P.E. Bieringer, N. Platt, G. Bieberbach, and J. Hurst. (2018) An Analysis and Evaluation of the MC-SCIPUFF and SWIFT Diagnostic Wind Models. Aeris, LLC Project Report No. CB-1, Aeris LLC, Louisville, CO.
• Sumner L, Finnegan M, Corbin J. (2016).  BSVE App for Determining Risk of Disease Spread to the U.S. Prepared for the Defense Threat Reduction Agency contract HDTRA1-15-C-0026.
• Neary D, Krem H, Corbin J. (2015). Hemolysis Resulting from Biological, Chemical, and Radiological Agents. Prepared for CAPNIA, Inc.
• Berger K, Corbin J, Winkleman T, and You E. (2015). Safeguarding the Research and Educational Environment at US Universities: Addressing Potential Personnel Security Risks in a Multidisciplinary Science Environment. Prepared for the FBI.
• Berger K, Corbin J, Winkleman T, and You E. (2015).  Safeguarding the Research and Educational Environment at U.S. Universities: Addressing Potential Personnel Security Risks Report of Virtual Roundtable Discussions with Graduate and Postgraduate Trainees. Prepared for the FBI.
• Sumner L, Neary D, Krem H, Sylvester D, and Corbin J. (2014). Anthrax Modeling Parameters. Prepared for Dr. Nancy McMillan, Battelle.
• Lawrence, W.G., E.C. Wack, D.C. Jamrog, J.C. Biddle, H.W. Lau, S.E. Holster, C.J. Smith, A.K. Goyal, F.D. D’Arcangelo, A.J. Annunzio, P.E. Bieringer, R. Cabell, and G. Bieberbach. (2013) Scientific evaluation of technology for standoff detection of chemical and biological agents., MITLL Project Report No. CB-3, Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA.
• Corbin, JB, Sumner L, McMurry J, Casagrande R. (2013). Modeling Medical Countermeasures against Y. pestis. Prepared for the Defense Threat Reduction Agency contract HDTRA1-10-C-0025.
• Bieberbach, G., P.E. Bieringer, S. Longmore, J. Copeland, and D. Rife. (2012). Aerosol Fate and Transport (Plume) Modeling. Volume I, National Bio and Agro-Defense Facility Updated Site-Specific Biosafety and Biosecurity Mitigation Risk Assessment, Department of Homeland Security, Science and Technology Directorate, 237-322.
• Bieringer, P.E. and G. Bieberbach.  (2012). Appendix A5: NBAF Updated SSRA Tornado Hazard Analysis. Appendices, National Bio and Agro-Defense Facility Updated Site-Specific Biosafety and Biosecurity Mitigation Risk Assessment, Department of Homeland Security, Science and Technology Directorate, A5- 1 – A5-18.
• Sumner L, Corbin, JB, Casagrande R. (2012). Modeling Medical Countermeasures against Botulinum toxin. Prepared for the Defense Threat Reduction Agency contract HDTRA1-10-C-0025.
• Corbin, JB, Sumner L, Casagrande R. (2011). Modeling Medical Countermeasures against F. tularensis. Prepared for the Defense Threat Reduction Agency contract HDTRA1-10-C 0025.
• Hurst, JG.: “Parallelizing a Data Intensive Lagrangian Stochastic Particle Model Using Graphics Processing Units”, M.S. Thesis, University of Colorado Boulder, Department of Computer Science, 2010. http://pqdtopen.proquest.com/#viewpdf?dispub=1481219
• Corbin, JB, Sumner L, Casagrande R. (2010). Modeling Medical Countermeasures against B. anthracis. Prepared for the Defense Threat Reduction Agency contract HDTRA1-10-C-0025.
• Byers J, Kushnir A, and Casagrande R. (2010). Impact Assessment of Attacks with Junin Virus. Prepared for The Department of Homeland Security Science and Technology Acquisition Division.
• Seufert B, Byers J, Kurinsky R, McGee P, Mussante M, Whiting M, and Casagrande R. (2009). Impact Assessment of Secondary Zoonoses After a Biological Attack. Prepared for The Department of Homeland Security Science and Technology Directorate.
• Casagrande R, Byers J, Taylor T, Higgins J, McGeorge J. (2009). Acquisition, Magnification and Weaponization of F. tularensis. Prepared for the US Department of Homeland Security Science and Technology Directorate. Contract GS-07F-0395U Order Number HSHQDC-09-J-00034.
• Casagrande R, Byers J, Taylor T, Higgins J, McGeorge J. (2009). Acquisition, Magnification and Weaponization of Y. pestis. Prepared for the US Department of Homeland Security Science and Technology Directorate. Contract GS-07F-0395U Order Number HSHQDC-09-J-00034.
• Byers J, Seufert B, and Casagrande R. (2008). Implementing Sequence Screening Tools. Prepared for The Department of Homeland Security Science and Technology Directorate.
• Byers J and Casagrande R. (2008). 2001 Anthrax Outbreak Case Study. Prepared for The Department of Homeland Security Science and Technology Directorate.
• Byers J, Seufert B, Wills N, Mussante M, Kramer E, Isom A, and Casagrande R. (2008). End-to-End Assessment of Attacks with Antibiotic Resistant Biological Agents. Prepared for The Department of Homeland Security Science and Technology Directorate. Contract HSHQDC-07-C-00058.
• Casagrande, R., Byers, J., Wills, N., Wills, S., Liou, Y., Isom, A., Kramer, E. (2007). The Custom Synthetic Nucleic Acid Industry and Biosecurity: A Systems Analysis. Prepared for The Department of Homeland Security Science and Technology Directorate. Research Support.
• Bieringer, P.E., M.E. Weber, J.I. Ferris, and S.W. Troxel. (2002). ASR-11 Weather Channel Analysis Results. MITLL Wx Project Memorandum No. 43PM Wx-0084, Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA.
• Bieringer, P.E., 2001: Weather Analysis for the April 12. (2001). ASR-11 Plot Amplitude Thresholding Event. MITLL Wx Project Memorandum No. 95PM Wx-0079, Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA.
• Troxel, S.W. P.E. Bieringer, J.I. Ferris, M.E. Weber, J.R. Eggert. (2000). Results of the ASR-11 Weather Channel Field Test at Eglin AFB, Florida, MITLL Wx Project Memorandum No. 95PM Wx-0067, Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA.
• Bieringer, P.E.. (2000). ASR-11 Weather Channel P3I Algorithm Analysis. MITLL Wx Project Memorandum No. 95PM Wx-0066, Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA.
• Troxel, S.W., P.E. Bieringer, M.E. Weber, G.W. Rappa. (1999). Field Testing of the Digital Airport Surveillance Radar (DASR) Weather Radar. MITLL Wx Project Memorandum No. 43PM Wx-0057, Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA.

• Bieringer, P.E., A.J. Annunzio, R.N. Fry, Jr., D.M. Lorenzetti, M.D. Sohn, G. Bieberbach, Jr., 2019: Assessing Operational Urban and Indoor Contaminant Dispersion Modeling Capabilities with a GPU-LES Synthetic Dispersion Environment System. 19th International Conference on Harmonisation within Atmospheric Dispersion Modeling for Regulatory Purposes., June 2019, Bruges, Belgium. 

• Bieringer, P.E., A.J. Piña, Jr., H.J.J. Jonker, D.M. Lorenzetti, M.D. Sohn, G. Bieberbach, Jr. and R.N. Fry, 2019: An Evaluation of the Joint Outdoor-indoor Urban Large Eddy Simulation (JOULES) Atmospheric Transport and Dispersion Modeling System. 19th International Conference on Harmonisation within Atmospheric Dispersion Modeling for Regulatory Purposes., June 2019, Bruges, Belgium.

• Bieringer, P.E., A.J. Piña, M.D. Sohn, H.J.J. Jonker, G. Bieberbach, Jr., D.M. Lorenzetti, R.N. Fry, Jr., 2017: Large Eddy Simulation (LES) Based System for Producing Coupled Urban and Indoor Airborne Contaminant Transport and Dispersion Solutions. 18th International Conference on Harmonisation within Atmospheric Dispersion Modeling for Regulatory Purposes., 9-12, October 2017, Bologna, Italy. View paper (pdf)

• Urban, J.T., K. Galvin, N. Platt, P.E. Bieringer, G. Bieberbach, and A. Annunzio, 2013: Comparison Of Hazard Area And Casualty Predictions Of A Small-Scale Chemical Attack Using Various Toxic Load Toxicity Models. 15th International Conference on Harmonisation within Atmospheric Dispersion Modeling for Regulatory Purposes., 6-9, May, Madrid, Spain. 
• Christopher C., N. Platt, J. Urban, P.E. Bieringer, G. Bieberbach, A. Wyszogrodzki and J. Weil, 2013: A Comparison Of Hazard Area Predictions Based On The Ensemble-Mean Plume Versus Individual Plume Realizations Using Different Toxic Load Models. 91st Annual American Meteorological Society Meeting. Jan 6-11, 2013, Austin TX. 
• Hamilton, A., S. Szmania, D. Kadavy, M. Isbell, M. Gardner, R. Cassagrande, G. Bieberbach, P.E. Bieringer, M. Kazmierczak, M. Rush, K. Coble, T. Marsh, D. Pendell, F. Bryant, P. Splichal, and J. Brewer, 2012: Site- Specific Biosafety And Biosecurity Risk Assessment For The National Bio And Agro-Defense Facility. International Society of Veterinary Epidemiology and Economics, August 20-24, 2012 Maastricht, Netherlands.
• Bieringer, P.E., J. Hannan, S. Longmore, G. Bieberbach, T. Warner, 2011: A Method for Targeting Chemical Samplers for Facility Monitoring in an Urban Environment. 14th International Conference on Harmonisation within Atmospheric Dispersion Modeling for Regulatory Purposes., 2-6, October, Kos, Greece. 
• Vandenberghe, F., P.E. Bieringer, I. Sykes, J. Hannan, J. Hurst, G. Bieberbach, S. Parker, and L. Rodriguez, 2011: Automated Source Parameter and Low Level Wind Estimation for Atmospheric Transport and Dispersion Applications. 14th International Conference on Harmonisation within Atmospheric Dispersion Modeling for Regulatory Purposes., 2-6, October, Kos, Greece. 
• Platt, N., C. Czech, J. Urban, D. DeRiggi, M. Ambroso, P.E. Bieringer, G. Bieberbach, A. Wyszogrodzki, and J. Weil, 2011: Use of The Ensemble-Mean Plume versus Individual Plume Realizations for Toxic Load Modeling. Harmonisation within Atmospheric Dispersion Modeling for Regulatory Purposes., 2-6, October, Kos, Greece. 
• Czech, C., N. Platt, J. Urban, P.E. Bieringer, G. Bieberbach, A. Wyszogrodzki and J. Weil, 2011: A comparison of hazard area predictions based on the ensemble-mean plume versus individual plume realizations using different toxic load models, Paper 2.5 at the Special Symposium on Applications of Air Pollution Meteorology, 91st Annual American Meteorological Society Meeting, Seattle, Washington, January 2011. 
• Bieringer, P. E., L. M. Rodriguez, I. Sykes, J. Hurst, F. Vandenberghe, J. Weil, G. Bieberbach Jr., S. Parker, R. Cabell, 2011: Fusion of chemical, biological, and meteorological observations for agent source term estimation and hazard refinement. Proceedings, Multisensor, Multisource Information Fusion: Architectures, Algorithms, and Applications 2011 Orlando, FL, International Society for Optics and Photonics (SPIE), Proceedings Vol 8064. [Available online at http://spie.org/x648.html?product_id=884221]. 
• Bieringer, P.E., I. Sykes, F. Vandenberghe, J. Hurst, J. Weil, G. Bieberbach, S. Parker, R. Cabell, 2010: Automated source parameter estimation for atmospheric transport and dispersion applications. 13th International Conference on Harmonisation within Atmospheric Dispersion Modeling for Regulatory Purposes., 1-4, June, Paris, France. 
• Bieberbach, G. P.E. Bieringer, R. Cabell, J. Hurst, J. Weil, A. Wyszogrodzki, and J. Hannan, 2010: A Framework for Developing Synthetic Chemical and Biological Agent Release Data Sets. 13th International Conference on Harmonisation within Atmospheric Dispersion Modeling for Regulatory Purposes., 1-4, June, Paris, France. 
• Bieberbach, G., P.E. Bieringer, A. Wyszogrodzki, J. Weil, R. Cabell, J. Hurst, and J. Hannan, 2010: Virtual chemical and biological (CB) agent data set generation to support the evaluation of CB contamination avoidance systems. The Fifth International Symposium on Computational Wind Engineering (CWE2010), 23-27, May, Chapel Hill, NC. 
• Bieringer, P.E., J. Weil, J. Hurst, G. Bieberbach, A. Wyszogrodzki, R. Sheu, M. Raines, and T. Warner, 2008: A Framework for Developing Synthetic Chemical and Biological Agent Release Data Sets for use in Virtual Test and Evaluation. Chemical and Biological Defense Physical Science and Technology Conference, 17- 21, Nov., New Orleans, LA. 
• Bieringer, P. E., F. Vandenberghe, J. Hurst, and J. Weil, 2008 Variational Assimilation of Chemical, Biological, and Meteorological Observations for Source Term Estimation and Hazard Refinement., Chemical and Biological Defense Physical Science and Technology Conference, 17-21, Nov., 2008, New Orleans, LA. 
• Bieringer, P.E., M. Donovan, F. Robasky, D. Clark, and J. Hurst, 2006: A Characterization of NWP Ceiling and Visibility Forecasts for the Terminal Airspace. Preprints, 12th Conference on Aviation, Range, and Aerospace Meteorology. 29 January – 2 February, Atlanta, GA, American Meteorological Society, Boston, MA. 
• Bieringer, P.E., Y. Xie, B. Martin, J. Morgan, S. Winkler, J. Hurst, J. McGinley, and S. Abers, 2006: An Assessment of Automated Boundary and Front Detection to Support Convective Initiation Forecasts. Preprints, 12th Conference on Aviation, Range, and Aerospace Meteorology. 29 January – 2 February, Atlanta, GA, American Meteorological Society, Boston, MA.
• Dupree, W.J., M. Robinson, R. DeLaura, P.E. Bieringer, 2006: Echo Tops Forecast Generation and Evaluation of Air Traffic Flow Management Needs in the National Airspace System. Preprints, 12th Conference on  Aviation, Range, and Aerospace Meteorology. 29 January – 2 February, Atlanta, GA, American Meteorological Society, Boston, MA.
• J. Hurst, P.E. Bieringer, A. Lewis, D. Jeannote, and E. Griffin, 2005: Optimizing MM5 On An Intel Based LINUX BEOWULF Cluster. Preprints, 6th WRF/15th MM5 Users’ Workshop, 27-30 June, Boulder, CO, National Center for Atmospheric Research.
• Wolfson. M., W. Dupree, R. Boldi, C. Wilson, K. Calden, R. Johnson, P.E. Bieringer, 2005: Tactical 0-2 Hour Convective Weather Forecasts For FAA. Preprints, World Weather Research Program Symposium on Nowcasting and Very Short Range Forecasting. 5 – 9 September, 2005, Toulouse, France.
• Bieringer, P.E., B. Martin, B. Collins, and J. Shaw, 2004: Commercial Aviation Encounters with Severe Low Altitude Turbulence. Preprints, 11th Conference on Aviation, Range, and Aerospace Meteorology. 4 – 8 October, Hyannis, MA, American Meteorological Society, Boston, MA.
• Wolfson, M.M., B. E. Forman, K. T. Calden, R. A. Boldi, W. J. Dupree, R. J. Johnson, C. Wilson, P.E. Bieringer, E. B. Mann, and J. P. Morgan, 2004: Tactical 0 – 2 Hour Convective Weather Forecasts for FAA. Preprints, 11th Conference on Aviation, Range, and Aerospace Meteorology. 4 – 8 October, Hyannis, MA, American Meteorological Society, Boston, MA. 
• Bieringer, P.E., 2003: The Effect of Topography on Initial condition Sensitivity of a Mesoscale Model. Preprints, 10th Conference on Mesoscale Processes. 23 – 27 June, Portland, OR, American Meteorological Society, Boston, MA. 
• Bieringer, P.E., 2003: Utilizing Local Terrain to Determine Targeted Weather Observation Locations. Proceedings: 2003 Battlespace Atmospheric and Cloud Impacts on Military Operations. 9 – 11 September, Naval Research Laboratory, Monterey, CA. 
• Bieringer, P.E. 2002: Low Altitude Buoyancy Wave Turbulence – A Potential Aviation Safety Threat. Preprints, 10th Conference on Aviation, Range, and Aerospace Meteorology. 13 – 16 May, Portland, OR, American Meteorological Society, Boston, MA. 
• Bieringer, P.E., J. Ferris, and M.E. Weber, 2001: General Purpose Weather Surveillance with the Airport Surveillance Radar 11 (ASR-11). Preprints, 30th International Conference on Radar Meteorology. 18-24 July, Munich, Germany, American Meteorological Society, Boston, MA 
• Bieringer, P.E., M.E. Weber, S. Troxel, N.I. Sapankevych, T.M. Scheve, and R.C. Evett, 2000: Ground Clutter Rejection in the Weather Channel of the Next Generation Airport Surveillance Radar (ASR-11). Preprints, 29th International Conference on Radar Meteorology, 12-16 July, Montreal, Quebec, Canada, American Meteorological Society, Boston, MA, 568-571. 
• Bieringer P.E., D.W. Miller, and D. Meyer, 1999: A Refinement of Thunderstorm Climatology for the Terminal Radar Control Airspace. Preprints, 8th Conference on Aviation, Range, and Aerospace Meteorology, 10- 15 January, Dallas, TX, American Meteorological Society, Boston, MA, 281-284. 
• Bieringer, P.E., and P.S. Ray, 1997: Localized Thermodynamic Stability as a Precursor to Thunderstorm Propagation, Growth and Decay. Preprints, 28th Conference on Radar Meteorology, 7-12 September, Austin, TX, American Meteorological Society, Boston, MA, 530-531. 
• Bieringer, P.E., P.S. Ray, X. Niu, and B. Whissel, 1996: An Improved Estimate of Tornado Occurrence in the United States. Preprints, 18th Conference on Severe Local Storms, 19-23 February, San Francisco, CA, American Meteorological Society. Boston, MA, 631-635. 
• Bieringer, P.E., and P.S. Ray, 1995: Tornado Warning Lead Times with and without NEXRAD Doppler Radar. Preprints, 27th Conference on Radar Meteorology, 9-13 Oct 1995, Vail, CO, American Meteorological Society, Boston MA, 202-204.
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